Haplotype Pyramiding Probability

Computes the exact joint transmission probability of pyramiding target loci across chromosomes under linkage.

Usage

hbr_pyramid_probability(chr, cm, donor, mating = c("DH", "RIL"))

Arguments

chr

Character or integer vector of chromosome assignments.

cm

Numeric vector of genetic positions (cM).

donor

Integer vector (0/1) indicating parental donor origin.

mating

Character. "DH" or "RIL".

Value

Numeric. Probability of inheriting all target favorable alleles.

Examples

hbr_pyramid_probability(
  chr = c("1", "1", "1"),
  cm = c(10, 10.5, 11),
  donor = c(0, 0, 0),
  mating = "DH")
#> [1] 0.4950373